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FilesBiopython 1.78Download Python for Mac - A free, open source and high-level programming language that can be used for web, Internet and software development, desktop GUIs, science, education and more. DOWNLOAD Python 3.9.0 / 2.7.18. This enables Disqus, Inc. To process some of your data. Use Python 3 as the macOS default. Python's website has a macOS Python 3 installer we can download and use. If we use the package installation, a python3 fill will be available in /usr/local/bin/. Aliasing is a must since the Python binary stored in /usr/bin/ can't be changed. What's nice about an alias is that it's specific to our command-line. Instructor The Mac operating systemcomes pre-installed with Python.However, the default Mac Python installation may not includethe correct version of Tcl/Tk to use Tkinter.Also, the Mac OS typically includes Python 2,whereas this course is oriented around using Python 3.In this video, I'll walk you through the entireinstallation process for Python 3 and Tcl/Tk on Mac. After trying for a long time I managed to make basemap-1.1.0 install on High Sierra. Dependency versioning was important. I installed Python 3.6 with homebrew.
biopython-1.78.tar.gz16Mb – Source Tarball
biopython-1.78.zip17Mb – Source Zip File
Installation InstructionsAll supported versions of Python include the Python package managementtool pip, which allows an easy installation from the command line onall platforms. Try:
For updating an older version of Biopython try:
This will remove older versions of Biopython and NumPy before it installsthe recent versions.
Should you wish to uninstall Biopython:
If pip is not already installed you may need to update your Python, but first try:
If you need to install under a specific version of Python, try somethinglike this:
On Windows, by default python and pip are not on the PATH.You can re-install Python and tick this option, or give the full path instead.Try something like this, depending on where your copy of Python is installed:
Other packagesWhile we generally recommend using pip to install Biopython usingthe wheel packages we provide on PyPI (as above), there are alsoBiopython packages for Conda, Linux, etc.
Installation from Source

FilesBiopython 1.78Download Python for Mac - A free, open source and high-level programming language that can be used for web, Internet and software development, desktop GUIs, science, education and more. DOWNLOAD Python 3.9.0 / 2.7.18. This enables Disqus, Inc. To process some of your data. Use Python 3 as the macOS default. Python's website has a macOS Python 3 installer we can download and use. If we use the package installation, a python3 fill will be available in /usr/local/bin/. Aliasing is a must since the Python binary stored in /usr/bin/ can't be changed. What's nice about an alias is that it's specific to our command-line. Instructor The Mac operating systemcomes pre-installed with Python.However, the default Mac Python installation may not includethe correct version of Tcl/Tk to use Tkinter.Also, the Mac OS typically includes Python 2,whereas this course is oriented around using Python 3.In this video, I'll walk you through the entireinstallation process for Python 3 and Tcl/Tk on Mac. After trying for a long time I managed to make basemap-1.1.0 install on High Sierra. Dependency versioning was important. I installed Python 3.6 with homebrew.
biopython-1.78.tar.gz16Mb – Source Tarball
biopython-1.78.zip17Mb – Source Zip File
Installation InstructionsAll supported versions of Python include the Python package managementtool pip, which allows an easy installation from the command line onall platforms. Try:
For updating an older version of Biopython try:
This will remove older versions of Biopython and NumPy before it installsthe recent versions.
Should you wish to uninstall Biopython:
If pip is not already installed you may need to update your Python, but first try:
If you need to install under a specific version of Python, try somethinglike this:
On Windows, by default python and pip are not on the PATH.You can re-install Python and tick this option, or give the full path instead.Try something like this, depending on where your copy of Python is installed:
Other packagesWhile we generally recommend using pip to install Biopython usingthe wheel packages we provide on PyPI (as above), there are alsoBiopython packages for Conda, Linux, etc.
Installation from SourceInstallation from source requires an appropriate C compiler, for exampleGCC on Linux, and MSVC on Windows.For Mac OS X, or as it is now branded, macOS, if you want tocompile Biopython from source you will need to have installed Apple'scommand line tools, which can de done with the terminal command:
This will offer to install Apple's XCode development suite - you can, butit is not needed and takes a lot of disk space.
You can then download and unzip a Biopython source code release, or getour code from GitHub. Then run:
or:
If you are still stuck, sign up to the Biopython mailinglist and ask for help there.
Required SoftwarePython 3.6, 3.7 or 3.8 or PyPy,including the Python development header files like python.h
C compiler (if compiling fromsource) Youneed a C compiler supported by setuptools, gcc will work fine onUNIX-like platforms. This is not needed on Windows if using thecompiled packages provided. On Mac OS, you should installApple's the compiler tools as described above.
NumPy (Numerical Python).
Optional SoftwareSome parts of Biopython use the following additional python libraries: Jpeg viewer mac.
ReportLab – used for pdfgraphics code
psycopg – used forBioSQL with a PostgreSQL database
mysql-connector– used for BioSQL with a MySQL database
MySQLdb – Analternative MySQL library used by BioSQL
In addition Biopython includes wrapper code for calling a number ofthird party command line tools including:
Wise2 – for command line tool dnal
NCBI StandaloneBLAST – commandline tool for running BLAST on your local machine
Clustalw –command line tool for building sequence alignments
SIMCOAL2 andFDist – commandline tools for population genetics
EMBOSS – lots of useful commandline tools.
Recent releases of Biopython require NumPy (and not Numeric). Version 1.76 is the last release to support Python 2.7 and 3.5, all later releases require Python 3.6 or greater:
biopython-1.77.tar.gz16Mb – Source Tarball
biopython-1.77.zip17Mb – Source Zip File
biopython-1.76.tar.gz16Mb – Source Tarball
biopython-1.75.zip17Mb – Source Zip File
biopython-1.75.tar.gz16Mb – Source Tarball
biopython-1.75.zip17Mb – Source Zip File
biopython-1.74.tar.gz16Mb – Source Tarball
biopython-1.74.zip17Mb – Source Zip File
biopython-1.73.tar.gz15Mb – Source Tarball (18 December 2018)
biopython-1.73.zip17Mb – Source Zip File
biopython-1.72.tar.gz16Mb – Source Tarball (27 June 2018)
biopython-1.72.zip17Mb – Source Zip File
biopython-1.71.tar.gz16Mb – Source Tarball (4 April 2018)
biopython-1.71.zip17Mb – Source Zip File
biopython-1.70.tar.gz15Mb – Source Tarball (11 July 2017)
biopython-1.70.zip16Mb – Source Zip File
biopython-1.69.tar.gz15Mb – Source Tarball (7 April 2017)
biopython-1.69.zip16Mb – Source Zip File
biopython-1.69.win32-py2.7.exe2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.11.0
biopython-1.69.win32-py2.7.msi2Mb – 32 bit Windows .msi Installer for Python 2.7 and NumPy 1.11.0
biopython-1.69.win32-py3.3.exe2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.10.2
biopython-1.69.win32-py3.3.msi2Mb – 32 bit Windows .msi Installer for Python 3.3 and NumPy 1.10.2
biopython-1.69.win32-py3.4.exe2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.11.0
biopython-1.69.win32-py3.4.msi2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.11.0
biopython-1.69.win32-py3.5.exe3Mb – 32 bit Windows .exe Installer for Python 3.5 and NumPy 1.11.1
biopython-1.69.win32-py3.5.msi3Mb – 32 bit Windows .msi Installer for Python 3.5 and NumPy 1.11.1
biopython-1.69.win32-py3.6.exe2Mb – 32 bit Windows .exe Installer for Python 3.6 and NumPy 1.11.3
biopython-1.69.win32-py3.6.msi2Mb – 32 bit Windows .msi Installer for Python 3.6 and NumPy 1.11.3
biopython-1.68.tar.gz14Mb – Source Tarball (26 August 2016)
biopython-1.68.zip15Mb – Source Zip File
biopython-1.68.win32-py2.6.exe2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2
biopython-1.68.win32-py2.7.exe2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.11.0
biopython-1.68.win32-py2.7.msi2Mb – 32 bit Windows .msi Installer for Python 2.7 and NumPy 1.11.0
biopython-1.68.win32-py3.3.exe2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.10.2
biopython-1.68.win32-py3.3.msi2Mb – 32 bit Windows .msi Installer for Python 3.3 and NumPy 1.10.2
biopython-1.68.win32-py3.4.exe2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.11.0
biopython-1.68.win32-py3.4.msi2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.11.0
biopython-1.68.win32-py3.5.exe2Mb – 32 bit Windows .exe Installer for Python 3.5 and NumPy 1.11.1
biopython-1.68.win32-py3.5.msi2Mb – 32 bit Windows .msi Installer for Python 3.5 and NumPy 1.11.1
biopython-1.67.tar.gz14Mb – Source Tarball (8 June 2016)
biopython-1.67.zip15Mb – Source Zip File
biopython-1.67.win32-py2.6.exe2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2
biopython-1.67.win32-py2.6.msi2Mb – 32 bit Windows .msi Installer for Python 2.6 and NumPy 1.8.2
biopython-1.67.win32-py2.7.exe2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1
biopython-1.67.win32-py2.7.msi2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1
biopython-1.67.win32-py3.3.exe2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1
biopython-1.67.win32-py3.3.msi2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1
biopython-1.67.win32-py3.4.exe2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.1
biopython-1.67.win32-py3.4.msi2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.9.1
biopython-1.67.win32-py3.5.exe2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.3
biopython-1.67.win32-py3.5.msi2Mb – 32 bit Windows .msi Installer for Python 3.4 and NumPy 1.9.3
biopython-1.66.tar.gz14Mb – Source Tarball (21 October 2015)
biopython-1.66.zip15Mb – Source Zip File
biopython-1.66.win32-py2.6.exe2Mb – 32 bit Windows .exe Installer for Python 2.6 and NumPy 1.8.2
biopython-1.66.win32-py2.7.exe2Mb – 32 bit Windows .exe Installer for Python 2.7 and NumPy 1.9.1
biopython-1.66.win32-py3.3.exe2Mb – 32 bit Windows .exe Installer for Python 3.3 and NumPy 1.9.1
biopython-1.66.win32-py3.4.exe2Mb – 32 bit Windows .exe Installer for Python 3.4 and NumPy 1.9.1
biopython-1.66.win32-py3.5.exe2Mb – 32 bit Windows .exe Installer for Python 3.5
biopython-1.66.win32-py3.5.msi2Mb – 32 bit Windows .msi Installer for Python 3.5
biopython-1.65.tar.gz13Mb – Source Tarball (17 December 2014)
biopython-1.65.zip14Mb – Source Zip File
biopython-1.65.win32-py2.6.exe2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.8.2
biopython-1.65.win32-py2.7.exe2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.9.1
biopython-1.65.win32-py3.3.exe2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.9.1
biopython-1.65.win32-py3.4.exe2Mb – 32 bit Windows Installer for Python 3.4 and NumPy 1.9.1
biopython-1.64.tar.gz12Mb – Source Tarball (29 May 2014)
biopython-1.64.zip13Mb – Source Zip File
biopython-1.64.win32-py2.6.exe2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.8.1
biopython-1.64.win32-py2.7.exe2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.8.1
biopython-1.64.win32-py3.3.exe2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.8.1
biopython-1.64.win32-py3.4.exe2Mb – 32 bit Windows Installer for Python 3.4 and NumPy 1.8.1
biopython-1.63.tar.gz11Mb – Source Tarball (6 December 2013)
biopython-1.63.zip12Mb – Source Zip File
biopython-1.63.win32-py2.6.exe2Mb – 32 bit Windows Installer for Python 2.6 and NumPy 1.7
biopython-1.63.win32-py2.7.exe2Mb – 32 bit Windows Installer for Python 2.7 and NumPy 1.7
biopython-1.63.win32-py3.3.exe2Mb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7
biopython-1.63b.tar.gz11,123 Kb – Source Tarball (beta release, 12 November 2013)
biopython-1.63b.zip12,111 Kb – Source Zip File
biopython-1.63b.win32-py2.6.exe1,877 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.7
biopython-1.63b.win32-py2.7.exe2,003 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.7
biopython-1.63b.win32-py3.3.exe2,005 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7
biopython-1.62.tar.gz11,123 Kb – Source Tarball (28 August 2013)
biopython-1.62.zip12,111 Kb – Source Zip File
biopython-1.62.win32-py2.5.exe1,852 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.62.win32-py2.6.exe1,877 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.62.win32-py2.7.exe2,003 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.62.win32-py3.3.exe2,005 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7
biopython-1.62b.tar.gz10,658 Kb – Source Tarball (beta release, 15 July 2013)
biopython-1.62b.zip11,607 Kb – Source Zip File
biopython-1.62b.win32-py2.5.exe1,661 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.62b.win32-py2.6.exe1,686 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.62b.win32-py2.7.exe1,813 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.62b.win32-py3.3.exe1,814 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7
biopython-1.61.tar.gz10,311 Kb – Source Tarball (5 February 2013)
biopython-1.61.zip11,198 Kb – Source Zip File
biopython-1.61.win32-py2.5.exe1,612 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.61.win32-py2.6.exe1,637 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.61.win32-py2.7.exe1,764 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.61.win32-py3.2-beta.exe1,757 Kb – 32 bit Windows Installer for Python 3.2 and NumPy 1.5(beta status for testing)
biopython-1.61.win32-py3.3-beta.exe1,750 Kb – 32 bit Windows Installer for Python 3.3 and NumPy 1.7(beta status for testing)
biopython-1.60.tar.gz9,280 Kb – Source Tarball (25 June 2012)
biopython-1.60.zip10,051 Kb – Source Zip File
biopython-1.60.win32-py2.5.exe1,469 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.60.win32-py2.6.exe1,492 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.60.win32-py2.7.exe1,1618 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.60.win32-py3.2-beta.exe1,611 Kb – 32 bit Windows Installer for Python 3.2 and NumPy 1.5(beta status for testing)
biopython-1.59.tar.gz8,377 Kb – Source Tarball (24 February 2012)
biopython-1.59.zip9,127 Kb – Source Zip File
biopython-1.59.win32-py2.5.exe1,440 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.59.win32-py2.6.exe1,463 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.59.win32-py2.7.exe1,590 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.58.tar.gz7,847 Kb – Source Tarball (18 August 2011)
biopython-1.58.zip8,474 Kb – Source Zip File
biopython-1.58.win32-py2.4-unsupported.exe1,427 Kb – 32 bit Windows Installer for Python 2.4 (which we nolonger officially support) and NumPy 1.1
biopython-1.58.win32-py2.5.exe1,428 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.58.win32-py2.6.exe1,450 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.58.win32-py2.7.exe1,577 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.57.tar.gz6,783 Kb – Source Tarball (2 April 2011)
biopython-1.57.zip7,446 Kb – Source Zip File
biopython-1.57.win32-py2.4-unsupported.exe1,405 Kb – 32 bit Windows Installer for Python 2.4 (which we nolonger officially support) and NumPy 1.1
biopython-1.57.win32-py2.5.exe1,405 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.57.win32-py2.6.exe1,428 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.57.win32-py2.7.exe1,555 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.56.tar.gz6,778 Kb – Source Tarball (26 November 2010)
biopython-1.56.zip7,347 Kb – Source Zip File
biopython-1.56.win32-py2.4.exe1,429 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.56.win32-py2.5.exe1,429 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.56.win32-py2.6.exe1,451 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.56.win32-py2.7.exe1,578 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.55.tar.gz6,493 Kb – Source Tarball (31 August 2010)
biopython-1.55.zip7,058 Kb – Source Zip File
biopython-1.55.win32-py2.4.exe1,448 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.55.win32-py2.5.exe1,449 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.55.win32-py2.6.exe1,471 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.55.win32-py2.7.exe1,598 Kb – 32 bit Windows Installer for Python 2.7 and NumPy 1.5
biopython-1.55b.tar.gz6,428 Kb – Source Tarball (August 18, 2010)
biopython-1.55b.zip6,996 Kb – Source Zip File
biopython-1.55b.win32-py2.4.exe1,451 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.55b.win32-py2.5.exe1,451 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.55b.win32-py2.6.exe1,474 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.54.tar.gz6,295 Kb – Source Tarball (May 20, 2010)
biopython-1.54.zip6,859 Kb – Source Zip File
biopython-1.54.win32-py2.4.exe1,434 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.54.win32-py2.5.exe1,434 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.54.win32-py2.6.exe1,457 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.54b.tar.gz6,554 Kb – Source Tarball (April 2, 2010)
biopython-1.54b.zip7,118 Kb – Source Zip File
biopython-1.54b.win32-py2.4.exe1,426 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.54b.win32-py2.5.exe1,427 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.54b.win32-py2.6.exe1,456 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.53.tar.gz4,185 Kb – Source Tarball (December 15, 2009)
biopython-1.53.zip4,652 Kb – Source Zip File
biopython-1.53.win32-py2.4.exe1,129 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.53.win32-py2.5.exe1,130 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.53.win32-py2.6.exe1,155 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.52.tar.gz5,486 Kb – Source Tarball (September 22, 2009)
biopython-1.52.zip5,930 Kb – Source Zip File
biopython-1.52.win32-py2.4.exe1,107 Kb – 32 bit Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.52.win32-py2.5.exe1,108 Kb – 32 bit Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.52.win32-py2.6.exe1,147 Kb – 32 bit Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.51.tar.gz5,428 Kb – Source Tarball (August 17, 2009)
biopython-1.51.zip5,922 Kb – Source Zip File
biopython-1.51.win32-py2.4.exe1,166 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.51.win32-py2.5.exe1,167 Kb – Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.51.win32-py2.6.exe1,206 Kb – Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.51b.tar.gz5,172 Kb – Source Tarball (June 23, 2009)
biopython-1.51b.zip5,605 Kb – Source Zip File
biopython-1.51b.win32-py2.4.exe1,161 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.51b.win32-py2.5.exe1,161 Kb – Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.51b.win32-py2.6.exe1,199 Kb – Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.50.tar.gz4,550 Kb – Source Tarball (April 20, 2009)
biopython-1.50.zip4,988 Kb – Source Zip File
biopython-1.50.win32-py2.3.exe1,228 Kb – Windows Installer for Python 2.3 and NumPy 1.1
biopython-1.50.win32-py2.4.exe1,232 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.50.win32-py2.5.exe1,232 Kb – Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.50.win32-py2.6.exe1,270 Kb – Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.50b.tar.gz4,788 Kb (April 3, 2009)
biopython-1.50b.zip5,250 Kb
biopython-1.50b.win32-py2.3.exe1,226 Kb – Windows Installer for Python 2.3 and NumPy 1.1
biopython-1.50b.win32-py2.4.exe1,230 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.50b.win32-py2.5.exe1,230 Kb – Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.50b.win32-py2.6.exe1,268 Kb – Windows Installer for Python 2.6 and NumPy 1.3
biopython-1.49.tar.gz4,052 Kb (November 21, 2008)
biopython-1.49.zip4,498 Kb
biopython-1.49.win32-py2.3.exe1,111 Kb – Windows Installer for Python 2.3 and NumPy 1.1
biopython-1.49.win32-py2.4.exe1,115 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.49.win32-py2.5.exe1,115 Kb – Windows Installer for Python 2.5 and NumPy 1.1
biopython-1.49b.tar.gz4,331 Kb (November 7, 2008)
biopython-1.49b.zip4,780 Kb
biopython-1.49b.win32-py2.3.exe1,109 Kb – Windows Installer for Python 2.3 and NumPy 1.1
biopython-1.49b.win32-py2.4.exe1,113 Kb – Windows Installer for Python 2.4 and NumPy 1.1
biopython-1.49b.win32-py2.5.exe1,114 Kb – Windows Installer for Python 2.5 and NumPy 1.1
Please note that Biopython 1.48 and older require the Numeric library,not its replacement NumPy. Windows installers for Python 2.4 and olderare available from the NumericalPython website. A Windowsinstaller for Numeric 24.2 for Python 2.5 is available here:
Numeric-24.2.win32-py2.5.exe446 Kb - Windows Installer for Python 2.5
Please note that Biopython 1.48 and older used mxTextTools2.0in some of the parsers. There were a few niggles with mxTextTools 3.0,so ideally install the older mxTextTools 2.0.
biopython-1.48.tar.gz4,051 Kb (September 8, 2008)
biopython-1.48.zip4,542 Kb
biopython-1.48.win32-py2.3.exe1,226 Kb
biopython-1.48.win32-py2.4.exe1,254 Kb
biopython-1.48.win32-py2.5.exe1,254 Kb
biopython-1.47.tar.gz4,018 Kb (July 5, 2008)
biopython-1.47.zip4,528 Kb
biopython-1.47.win32-py2.3.exe1,207 Kb
biopython-1.47.win32-py2.4.exe1,236 Kb
biopython-1.47.win32-py2.5.exe1,236 Kb
biopython-1.46.tar.gz3,926 Kb (June 29, 2008)
biopython-1.46.zip4,426 Kb
biopython-1.46.win32-py2.3.exe1,206 Kb
biopython-1.46.win32-py2.4.exe1,235 Kb
biopython-1.46.win32-py2.5.exe1,235 Kb
biopython-1.45.tar.gz3,886 Kb (March 22, 2008)
biopython-1.45.zip4,395 Kb
biopython-1.45.win32-py2.3.exe1,113 Kb
biopython-1.45.win32-py2.4.exe1,141 Kb
biopython-1.45.win32-py2.5.exe1,142 Kb
biopython-1.44.tar.gz3,750 Kb (October 28, 2007)
biopython-1.44.zip4,243 Kb
biopython-1.44.win32-py2.3.exe1,091 Kb
biopython-1.44.win32-py2.4.exe1,116 Kb
biopython-1.44.win32-py2.5.exe1,116 Kb
biopython-1.43.tar.gz3,778 Kb (March 17, 2007)
biopython-1.43.zip4,271 Kb
biopython-1.43.win32-py2.3.exe1,104 Kb
biopython-1.43.win32-py2.4.exe1,108 Kb
biopython-1.43.win32-py2.5.exe1,109 Kb
biopython-1.42.tar.gz3,841 Kb (July 16, 2006)
biopython-1.42.zip4,399 Kb
biopython-1.42.win32-py2.3.exe1,070 Kb
biopython-1.42.win32-py2.4.exe1,074 Kb
biopython-1.42.win32-py2.5.exe1,075 Kb
biopython-1.41.tar.gz3,719 Kb (October 28, 2005)
biopython-1.41.zip4,241 Kb
biopython-1.41.win32-py2.3.exe1,038 Kb
biopython-1.41.win32-py2.4.exe1,042 Kb
biopython-1.40b.tar.gz3,437 Kb (February 18, 2005)
biopython-1.40b.zip3,267 Kb
biopython-1.40b.win32-py2.3.exe1,019 Kb
biopython-1.40b.win32-py2.4.exe1,023 Kb
biopython-1.30.tar.gz3,186 Kb (May 14, 2004)
biopython-1.24.tar.gz3,081 Kb (February 16, 2004)
biopython-1.24.zip3,623 Kb
biopython-1.24.win32-py2.2.exe892 Kb
biopython-1.24.win32-py2.3.exe894 Kb
biopython-1.23.tar.gz2,241 Kb (October 18, 2003)
biopython-1.23.zip2,719 Kb
biopython-1.23.win32-py2.2.exe833 Kb
biopython-1.23.win32-py2.3.exe842 Kb
biopython-1.22.tar.gz2,214 Kb (October 9, 2003)
biopython-1.22.zip2,691 Kb
biopython-1.21.tar.gz2,214 Kb
biopython-1.21.zip2,897 Kb
biopython-1.21.win32-py2.2.exe770 Kb
biopython-1.21.win32-py2.3.exe832 Kb
biopython-1.20.tar.gz2,101 Kb (July 28, 2003)
biopython-1.20.zip2,602 Kb
biopython-1.10.tar.gz1,811 Kb (December 17, 2002)
biopython-1.10.zip2,300 Kb
biopython-1.10.win32-py2.2.exe1,199 Kb
biopython-1.00a4.tar.gz1,739Kb (December 18, 2001)
biopython-1.00a4.zip2,121Kb
biopython-1.00a4.win32-py2.0.exe835Kb
biopython-1.00a4.win32-py2.1.exe837Kb
biopython-1.00a4.win32-py2.2.exe838Kb
MacBiopython-1.00a4.sit2.2Mb
biopython-1.00a3.tar.gz1,816Kb (September 3, 2001)
biopython-1.00a3.zip2,165Kb
biopython-1.00a3.win32-py2.0.exe583Kb
biopython-1.00a3.win32-py2.1.exe585Kb
Macbiopython-1.00a3.sit.bin1926Kb
This page tells you how to setup a Python programming environment for your Mac OS X computer and provides a step-by-step guide for creating and running a simple 'Hello, world' Python program. All of the software is freely available on the Web. These instructions are for MacOS X 10.13 (High Sierra), but the instructions for other recent versions of Mac OS X are similar.

OverviewThe Python programming environment required by this booksite consists of:
Python, that is, the Python compiler/interpreter.
The Python standard libraries.
IDLE, the Python Integrated DeveLopment Environment.
The Tkinter, NumPy, and Pygame libraries, which are used by the booksite programs that do graphics or audio processing.
The booksite library, that is, a set of modules that we developed specifically to support this booksite.
The Terminal application that is bundled with Mac OS X.

Downloading and Installing Python, IDLE, Tkinter, NumPy, and PygameNote: The Mac Finder application uses the term folder to mean a container of documents and, perhaps, other folders. This document instead uses the equivalent Unix term directory.
Python 2 is bundled with Mac OS X. However, Python 3 is not. We recommend that you download and install Python 3, and use Python 3 exclusively when running programs associated with this booksite.
Perform these steps to download and install Python, IDLE, Tkinter, NumPy, and PyGame:
Browse to the Python for Mac download page.
In the resulting page click on the Download Python 3.6.5 button. Your browser will download the file python-3.6.5-macosx10.6.pkg to your Downloads directory.
Using Mac Finder Manager, navigate to your Downloads directory, and double-click on the python-3.6.5-macosx10.6.pkg file to install Python, Tkinter, and IDLE. Use the default options. (It's OK to delete the python-3.6.5-macosx10.6.pkg file after the installation is complete.)
Open a Terminal window. To do that, click on the Spotlight Search icon on the right end of the menu bar. (It has the appearance of a magnifying glass.) In the resulting dialog box, type Terminal.app followed by the Enter key.
In the Terminal window issue these commands to install NumPy and PyGame:
To 'issue a command' you should type the command followed by the Enter key.
Perform these steps to test your installation:
In the Terminal window issue the python3 command. You should see something like this:
If you see that output, then your installation of Python, IDLE, and Tkinter was successful.
At the Python >>> prompt, type import numpy followed by the Enter key. If no error messages appear, then your installation of NumPy was successful.
At the Python >>> prompt, type import pygame followed by the Enter key. If no error messages appear, then your installation of PyGame was successful.
At the Python >>> prompt, type exit() followed by the Enter key to exit Python.
In the Terminal window issue the command idle3. If an IDLE window appears, then you have installed IDLE properly. Close the IDLE window.
Close the Command Prompt window.
IMPORTANT: When running the Python programs associated with this booksite, do not issue the python command. Instead issue the python3 command. The former command runs the Python 2 compiler/interpreter that is bundled with Mac OS X; the latter command runs the Python 3 compiler/interpreter that you installed by following the instructons on this page.

Downloading and Installing the Booksite LibraryMac android usb file transfer. Perform these steps to download and install the booksite library:
Use your Web browser to download this introcs-1.0.zip file to your /Users/yourusername/Downloads directory.
In the Finder, double click on /Users/yourusername/Downloads/introcs-1.0.zip to unzip the file, thus creating a directory named /Users/yourusername/Downloads/introcs-1.0. (It's OK to delete the /Users/yourusername/Downloads/introcs-1.0.zip file after you have unzipped it.) https://software-starter.medium.com/open-my-snapchat-app-727d04b2eec9.
Open a Terminal window.
At any time the Terminal application has a working directory. Initially the working directory is /Users/yourusername. In the Terminal window issue the cd Downloads command to change your working directory to /Users/yourusername/Downloads, and then issue the cd introcs-1.0 command to change your working directory to /Users/yourusername/Downloads/introcs-1.0. (Incidentally, the cd . command changes your working directory to the 'parent' of the current working directory.)
Issue the ls command to display the names of all files in your working directory. Make sure that a file named setup.py https://imquodersai1987.wixsite.com/downloadstarter/post/forma-906-freezer-manual. is in your working directory.
Issue the python3 setup.py install --user command. The computer copies the files defining the booksite modules to a directory where Python can find them, and writes status messages to your Terminal window to indicate its progress.
Perform these steps to test your installation of the booksite library:
In the Terminal window issue the python3 command.
At the Python >>> prompt, type the statement import stdio followed by the Enter key. If Python generates no error messages, then you have installed the booksite library properly.
At the Python >>> prompt, type exit() followed by the Enter key to exit Python.
Close the Terminal window.

Configuring IDLESo far you've downloaded and installed all of the software that you'll need. You should perform one more step before creating your first program: configure the IDLE programming environment. Follow these instructions:
Open a Terminal window.
In the Terminal window issue the command idle3 to launch IDLE.
Click on the Python → Preferences. menu item.
Click on the General tab.
Click on the Open Edit Window radio button.
Click on the Ok button.
Close the IDLE window.
Close the Terminal window.

Composing Your First ProgramHaving installed Python, the Python standard libraries, IDLE, Tkinter, NumPy, Pygame, and the booksite libraries, and having configured IDLE, you are ready to compose your first Python program. Perform these instructions:
Using the Mac Finder, create a directory named /Users/yourusername/hello.
Open a Terminal window.
Issue the cd hello command to make the /Users/yourusername/hello directory your working directory.
Issue the command idle3 & to launch IDLE. Note the trailing ampersand. The trailing ampersand tells the computer to run the idle3 program in the background, thereby leaving your Terminal application free to handle additional commands while IDLE is running.
In IDLE, type the four-line Python program helloworld.py exactly as it appears below. Use the arrow keys, mouse, or touchpad to move within the text that you have typed. Use the Delete key to delete text. Be careful; the smallest typing mistake might cause the program to fail.
When you are finished typing, in IDLE click on the File → Save. menu item to save the Python program. Save it in a file named helloworld.py in the directory /Users/yourusername/hello. The file name is case sensitive, so make sure you use all lowercase letters.

Running Your First ProgramThe final step is to run your program. It is possible to run some Python programs from within IDLE, but you should run the programs associated with this booksite directly from a Terminal window. To do that, perform these steps:
Within the same Terminal window, issue the ls command to display the names of all files in the working directory. Confirm that the working directory contains your helloworld.py file.
Issue the python3 helloworld.py command to run your program. If the computer writes 'Hello, World' to the Terminal window, then the execution of your helloworld.py program was successful. If the computer instead writes error messages, then use IDLE to correct your program, and issue the python3 helloworld.py command again. Repeat until your program runs successfully. If your program runs successfully the first time you try, then intentionally introduce an error into your program, just so you get some experience with correcting errors.
Close the IDLE window.
Close the Terminal window.
You now have installed and configured a reasonable Python environment, and have used it to compose and run a Python program. Congratulations! You are a Python programmer!

Downloading the Booksite Example Programs (optional)Download Python 3.7 MacWe recommend that you download the booksite example programs, that is, the example Python programs that are presented incrementally throughout the booksite. Having done so, you can run those programs to help you learn about them. Perform these instructions:
Use your Web browser to download this introcs-python.zip file to your /Users/yourusername/Downloads directory.
In the Mac Finder, double-click on /Users/yourusername/Downloads/introcs-python.zip to unzip the file, thus creating the /Users/yourusername/Downloads/introcs-python directory containing the booksite example programs. (It's OK to delete the /Users/yourusername/Downloads/introcs-python.zip file after you have unzipped it.)
Then perform these steps to test your download of the booksite example programs:
Open a Terminal window.
Issue the cd Downloads and cd introcs-python commands to make /Users/yourusername/Downloads/introcs-python your working directory.
Issue the ls command. Confirm that the working directory contains a file named bouncingball.py.
Issue the python3 bouncingball.py command. If Python launches a stddraw window showing an animated bouncing ball, then your download of the booksite example programs was successful.
Close the stddraw window.
Close the Terminal window.

Downloading the Booksite Example Data (optional)We recommend that you download the booksite example data, that is, the data files used by the booksite example programs that are presented incrementally throughout the booksite. Perform these instructions:
Use your Web browser to download this introcs-data.zip file to your /Users/yourusername/Downloads directory.
In the Finder, double-click on /Users/yourusername/Downloads/introcs-data.zip to unzip the file, thus creating the /Users/yourusername/Downloads/introcs-data directory containing the booksite example data files. (It's OK to delete the /Users/yourusername/Downloads/introcs-data.zip file after you have unzipped it.)

Downloading the Booksite Library: Part 2 (optional)Previously on this page we described how to download and install the booksite library so Python can find it. Now we describe how to download the booksite library so you can find it — for the sake of studying the code that implements it, should you so desire. Perform these instructions:
Use your Web browser to download this stdlib-python.zip file to your /Users/yourusername/Downloads directory.
In the Mac Finder, double-click on /Users/yourusername/Downloads/stdlib-python.zip to unzip the file, thus creating the /Users/yourusername/Downloads/stdlib-python directory containing the booksite library. (It's OK to delete the /Users/yourusername/Downloads/stdlib-python.zip file after you have unzipped it.)
We invite you to study the code that implements the booksite library. But don't be concerned if some of the code is cryptic. The code that implements the booksite library uses some features of Python that are beyond the scope of the textbook and this booksite.

Q & AQ. Why do I get the error ImportError: No module named stdio when I issue the command python program_that_uses_stdio.py? Vw t5 manual.
A. You must issue the command python3 program_that_uses_stdio.py, as described above.
Q.  I downloaded files using my browser, but can't find them. Where are they?
Mac pink shades. A. Many browsers by default place downloaded files in the directory /Users/yourusername/Downloads.
Q. How do I break out of an infinite loop when running my program from the Terminal application?
A. Type Ctrl-c. That is, while pressing the Ctrl key, type the c key.
Q. Must I use IDLE to create my Python programs? Can I use some other text editor?
Download Python 3.6 For MacA. You need not use IDLE to create your Python programs; it is fine to use some other text editor. For example, it is reasonable to use the TextEdit editor that is bundled with Mac OS X. However if you do use some other text editor, then make sure you change its settings so it (1) uses a four-space indentation scheme, and (2) indents using spaces instead of tabs. The Wikipedia Comparison of text editors page provides summary descriptions of many text editors.